SplitsTree Community Edition - download page

SplitsTreeCE will replace SplitsTree4 and Dendroscope3. It provides implementations of unrooted and rooted trees, unrooted and rooted networks, tanglegrams, consensus networks and densi-trees, and haplotype networks and phylogenetic outlines.

This is an early beta release of the new SplitsTreeCE program. This means that the code is still under active development, in particular:

There will be some bugs (please let us know about any that you find).
There are several missing features that are still to be added (please let us know about things that you would like).
File formats might change slightly.
The user interface might change slightly.
Any feedback that you give us will help to shape the program.

Program installers:

SplitsTreeCE_macos_6_1_14-beta.dmg (MacOS X)
SplitsTreeCE_windows-x64_6_1_14-beta.exe (Windows)
SplitsTreeCE_unix_6_1_14-beta.sh (Linux or unix)

To find out what has changed in recent versions, see the release notes.

Genome analysis:

SplitsTreeCE provides a method for quickly determining the phylogenetic context of a prokaryotic draft genome. This requires the use of a database file, which is specified in the in find similar tab of analyze genomes dialog as a reference database file (unzip first).

gtdb_rep_k21_s1000.db.zip, sketch size 1,000

Auxiliary file:

Use this file to check MD5 checksums for the installers: md5sums.txt.